HAPMIXMAP a program to model HapMap haplotypes using tag SNP genotype data

HAPMIXMAP manual

Contents

• Introduction

• How to obtain the program

  • Installing a binary from SourceForge

  • Compiling from source

  • Obtaining the latest source from the Subversion repository

• How to use the program

  • Running the program

  • Data Formats

  • Obtaining HapMap data

  • Using the data formatting tool

• Program options

• Interpreting Output

  • Evaluating the sampler

  • Evaluating the fit of the model

  • Testing for association 

• Tutorial

Last updated: 16 July 2007